alex jaffe
@alexjaf.bsky.social
(marine) microbial ecology + evolution | stanford postdoc | he/him/his
typical use case, just interested in seeing a few more of the abundant lineages .
November 25, 2025 at 3:32 AM
typical use case, just interested in seeing a few more of the abundant lineages .
yes, though i understand you run into color palette limits at a certain point …
November 24, 2025 at 3:31 PM
yes, though i understand you run into color palette limits at a certain point …
hey ben, thanks for notifying us of the new version! any plans to allow the user to modulate the number of lineages 'colored in' in appraise plots? is that possible already?
November 24, 2025 at 3:57 AM
hey ben, thanks for notifying us of the new version! any plans to allow the user to modulate the number of lineages 'colored in' in appraise plots? is that possible already?
these are good but fairly pricey! eatmamahuhu.com/collections/...
Potstickers
Classic Chinese-American, thoughtful ingredients. Find our gluten free frozen potstickers in grocery stores around the Bay Area.
eatmamahuhu.com
November 12, 2025 at 9:03 PM
these are good but fairly pricey! eatmamahuhu.com/collections/...
congrats - and great to see some more rhodopsins characterized from the CPR!
October 16, 2025 at 6:52 PM
congrats - and great to see some more rhodopsins characterized from the CPR!
thanks for flagging.
September 22, 2025 at 4:32 PM
thanks for flagging.
@tendersombrero.bsky.social may have some thoughts?
August 27, 2025 at 4:17 PM
@tendersombrero.bsky.social may have some thoughts?
fingers crossed for good data!
August 26, 2025 at 7:12 PM
fingers crossed for good data!
cool, im interested - will send you an email!
August 23, 2025 at 10:29 PM
cool, im interested - will send you an email!
is research on mesophilic environments eligible ?!
August 23, 2025 at 7:28 PM
is research on mesophilic environments eligible ?!
amen. feel like i need a print-out version for my desk, or something!
August 18, 2025 at 4:44 PM
amen. feel like i need a print-out version for my desk, or something!
tested for what, exactly? in any case, there are nice examples from marine micro - HOTS/BATS/ san pedro for long term time series, geotraces malaspina and tara for geographic breadth …
August 8, 2025 at 1:24 AM
tested for what, exactly? in any case, there are nice examples from marine micro - HOTS/BATS/ san pedro for long term time series, geotraces malaspina and tara for geographic breadth …
you are correct - thanks for flagging that!
July 23, 2025 at 11:31 PM
you are correct - thanks for flagging that!
one other quick question for you - seeing lots of otu coverage vals with 0.31 decimal increments - expected behavior? if so, related to default kmer len?
July 23, 2025 at 9:48 PM
one other quick question for you - seeing lots of otu coverage vals with 0.31 decimal increments - expected behavior? if so, related to default kmer len?
ah, that's great! working mostly with illumina right now but this may be useful in the future. kudos on your documentation, by the way - very clear
July 18, 2025 at 1:14 AM
ah, that's great! working mostly with illumina right now but this may be useful in the future. kudos on your documentation, by the way - very clear
congrats to the team and thanks for the great tool! curious if you have any tips/tricks for 'supplement' - im concerned for ex. that adding more erroneous MAGs from current nanopore chemistry might mess with smafa
July 17, 2025 at 9:37 PM
congrats to the team and thanks for the great tool! curious if you have any tips/tricks for 'supplement' - im concerned for ex. that adding more erroneous MAGs from current nanopore chemistry might mess with smafa