Theoretical Biophysics
@theobiophysics.bsky.social
Theoretical Biophysics, Quantitative Biology
https://sites.google.com/view/theoreticalbiophysics/theoretical-biophysics
Our podcast
https://creators.spotify.com/pod/show/theobiophysics
An online seminar series
https://sites.google.com/view/popdyn/home
https://sites.google.com/view/theoreticalbiophysics/theoretical-biophysics
Our podcast
https://creators.spotify.com/pod/show/theobiophysics
An online seminar series
https://sites.google.com/view/popdyn/home
Pinned
🚨NEWS!
We are organising a new monthly event:
The Young Biophysicists Virtual Meetings
where early career researchers can present their work in a friendly environment. All the info and abstract submission on our website
sites.google.com/view/theoret...
Host by Divya Choudhary and Satyam Anand
We are organising a new monthly event:
The Young Biophysicists Virtual Meetings
where early career researchers can present their work in a friendly environment. All the info and abstract submission on our website
sites.google.com/view/theoret...
Host by Divya Choudhary and Satyam Anand
Reposted by Theoretical Biophysics
Resource allocation models: theory and applications in microbial biotechnology
doi.org/10.1016/j.co...
doi.org/10.1016/j.co...
November 29, 2025 at 8:19 AM
Resource allocation models: theory and applications in microbial biotechnology
doi.org/10.1016/j.co...
doi.org/10.1016/j.co...
Reposted by Theoretical Biophysics
A niche for ecology and evolution in microbial biotechnology
@cp-trendsecolevo.bsky.social SCIENCE & SOCIETY by Callie Chappell and @jonshurin.bsky.social
www.cell.com/trends/ecolo...
@cp-trendsecolevo.bsky.social SCIENCE & SOCIETY by Callie Chappell and @jonshurin.bsky.social
www.cell.com/trends/ecolo...
A niche for ecology and evolution in microbial biotechnology
Bioengineering offers potential advancements in health, manufacturing, and environmental
remediation, but without involvement from ecologists and evolutionary biologists the
impact of environmental bi...
www.cell.com
November 28, 2025 at 8:21 AM
A niche for ecology and evolution in microbial biotechnology
@cp-trendsecolevo.bsky.social SCIENCE & SOCIETY by Callie Chappell and @jonshurin.bsky.social
www.cell.com/trends/ecolo...
@cp-trendsecolevo.bsky.social SCIENCE & SOCIETY by Callie Chappell and @jonshurin.bsky.social
www.cell.com/trends/ecolo...
Reposted by Theoretical Biophysics
We're at 735 registrants and counting! 🎉🦠
If you haven't registered yet, don't miss out on this exciting (free) symposium on gut microbial metabolites and their impacts on host health.
Please share with your networks. 🔗👇
isbscience.org/events/2025-...
If you haven't registered yet, don't miss out on this exciting (free) symposium on gut microbial metabolites and their impacts on host health.
Please share with your networks. 🔗👇
isbscience.org/events/2025-...
November 26, 2025 at 5:19 PM
We're at 735 registrants and counting! 🎉🦠
If you haven't registered yet, don't miss out on this exciting (free) symposium on gut microbial metabolites and their impacts on host health.
Please share with your networks. 🔗👇
isbscience.org/events/2025-...
If you haven't registered yet, don't miss out on this exciting (free) symposium on gut microbial metabolites and their impacts on host health.
Please share with your networks. 🔗👇
isbscience.org/events/2025-...
Reposted by Theoretical Biophysics
How do brain areas control each other? 🧠🎛️
✨In our NeurIPS 2025 Spotlight paper, we introduce a data-driven framework to answer this question using deep learning, nonlinear control, and differential geometry.🧵⬇️
✨In our NeurIPS 2025 Spotlight paper, we introduce a data-driven framework to answer this question using deep learning, nonlinear control, and differential geometry.🧵⬇️
November 26, 2025 at 7:32 PM
How do brain areas control each other? 🧠🎛️
✨In our NeurIPS 2025 Spotlight paper, we introduce a data-driven framework to answer this question using deep learning, nonlinear control, and differential geometry.🧵⬇️
✨In our NeurIPS 2025 Spotlight paper, we introduce a data-driven framework to answer this question using deep learning, nonlinear control, and differential geometry.🧵⬇️
Reposted by Theoretical Biophysics
1/6 New preprint 🚀 How does the cortex learn to represent things and how they move without reconstructing sensory stimuli? We developed a circuit-centric recurrent predictive learning (RPL) model based on JEPAs.
🔗 doi.org/10.1101/2025...
Led by @atenagm.bsky.social @mshalvagal.bsky.social
🔗 doi.org/10.1101/2025...
Led by @atenagm.bsky.social @mshalvagal.bsky.social
November 27, 2025 at 8:24 AM
1/6 New preprint 🚀 How does the cortex learn to represent things and how they move without reconstructing sensory stimuli? We developed a circuit-centric recurrent predictive learning (RPL) model based on JEPAs.
🔗 doi.org/10.1101/2025...
Led by @atenagm.bsky.social @mshalvagal.bsky.social
🔗 doi.org/10.1101/2025...
Led by @atenagm.bsky.social @mshalvagal.bsky.social
Reposted by Theoretical Biophysics
Physique des cellules et cancer UMR168
Wednesday, 03/12/2025 11:30 am
Centre de recherche - Paris Amphithéâtre Marie Curie
Aleksandra Radenovic
Institute of Bioengineering, School of Engineering, Swiss Federal Institute of Technology Lausanne, Switzerland
«Advancing Single-Molecule Imaging »
Wednesday, 03/12/2025 11:30 am
Centre de recherche - Paris Amphithéâtre Marie Curie
Aleksandra Radenovic
Institute of Bioengineering, School of Engineering, Swiss Federal Institute of Technology Lausanne, Switzerland
«Advancing Single-Molecule Imaging »
November 27, 2025 at 9:25 AM
Physique des cellules et cancer UMR168
Wednesday, 03/12/2025 11:30 am
Centre de recherche - Paris Amphithéâtre Marie Curie
Aleksandra Radenovic
Institute of Bioengineering, School of Engineering, Swiss Federal Institute of Technology Lausanne, Switzerland
«Advancing Single-Molecule Imaging »
Wednesday, 03/12/2025 11:30 am
Centre de recherche - Paris Amphithéâtre Marie Curie
Aleksandra Radenovic
Institute of Bioengineering, School of Engineering, Swiss Federal Institute of Technology Lausanne, Switzerland
«Advancing Single-Molecule Imaging »
Our friend Kunihiko Kaneko published his new amazing book!
"Universal Biology: The Physics of Life through the Macro-Micro Consistency Principle"
An insights into biology from physics perspective providing picture of the universal characteristics of living systems across scales
"Universal Biology: The Physics of Life through the Macro-Micro Consistency Principle"
An insights into biology from physics perspective providing picture of the universal characteristics of living systems across scales
Universal Biology: The Physics of Life through the Macro-Micro Consistency Principle
Universal Biology: The Physics of Life through the Macro-Micro Consistency Principle : Kaneko, Kunihiko: Amazon.de: Books
www.amazon.de
November 26, 2025 at 10:43 AM
Our friend Kunihiko Kaneko published his new amazing book!
"Universal Biology: The Physics of Life through the Macro-Micro Consistency Principle"
An insights into biology from physics perspective providing picture of the universal characteristics of living systems across scales
"Universal Biology: The Physics of Life through the Macro-Micro Consistency Principle"
An insights into biology from physics perspective providing picture of the universal characteristics of living systems across scales
Reposted by Theoretical Biophysics
We got published in Ecology&Evolution! We propose an equation from which we derive the fundamental equations of population ecology and evolutionary biology (the Price equation). #evobio #philbio onlinelibrary.wiley.com/doi/10.1002/...
November 23, 2025 at 8:09 AM
We got published in Ecology&Evolution! We propose an equation from which we derive the fundamental equations of population ecology and evolutionary biology (the Price equation). #evobio #philbio onlinelibrary.wiley.com/doi/10.1002/...
Reposted by Theoretical Biophysics
Bacterial networks #BacNet26 in September 2026 will be chaired by @lalouxlab.bsky.social and co-chaired by @s-lab.bsky.social with @coralietesseur.bsky.social
Sneak peak on invited speakers and preliminary program:
meetings.embo.org/event/26-bac...
Sneak peak on invited speakers and preliminary program:
meetings.embo.org/event/26-bac...
November 20, 2025 at 8:47 AM
Bacterial networks #BacNet26 in September 2026 will be chaired by @lalouxlab.bsky.social and co-chaired by @s-lab.bsky.social with @coralietesseur.bsky.social
Sneak peak on invited speakers and preliminary program:
meetings.embo.org/event/26-bac...
Sneak peak on invited speakers and preliminary program:
meetings.embo.org/event/26-bac...
Reposted by Theoretical Biophysics
Faculty Position: Neurocomputation
Apply by December 1, 2025
WTI invites those from mathematical, computational, and related fields interested in working with experimentalists to develop new frameworks for understanding cognition.
🔗 wti.yale.edu/opportunities/faculty-neurocomputation
Apply by December 1, 2025
WTI invites those from mathematical, computational, and related fields interested in working with experimentalists to develop new frameworks for understanding cognition.
🔗 wti.yale.edu/opportunities/faculty-neurocomputation
November 17, 2025 at 3:37 PM
Faculty Position: Neurocomputation
Apply by December 1, 2025
WTI invites those from mathematical, computational, and related fields interested in working with experimentalists to develop new frameworks for understanding cognition.
🔗 wti.yale.edu/opportunities/faculty-neurocomputation
Apply by December 1, 2025
WTI invites those from mathematical, computational, and related fields interested in working with experimentalists to develop new frameworks for understanding cognition.
🔗 wti.yale.edu/opportunities/faculty-neurocomputation
Reposted by Theoretical Biophysics
Fully funded NERC GW4+ PhD Opportunity - *Understanding The Spread of Antimicrobial Resistance by Migratory Birds*
Supervised by me, @stubearhop.bsky.social (Exeter) & Patricia Brekke (ZSL). Application deadline 8th January. Please get in touch for more info
www.findaphd.com/phds/project...
Supervised by me, @stubearhop.bsky.social (Exeter) & Patricia Brekke (ZSL). Application deadline 8th January. Please get in touch for more info
www.findaphd.com/phds/project...
November 17, 2025 at 6:06 AM
Fully funded NERC GW4+ PhD Opportunity - *Understanding The Spread of Antimicrobial Resistance by Migratory Birds*
Supervised by me, @stubearhop.bsky.social (Exeter) & Patricia Brekke (ZSL). Application deadline 8th January. Please get in touch for more info
www.findaphd.com/phds/project...
Supervised by me, @stubearhop.bsky.social (Exeter) & Patricia Brekke (ZSL). Application deadline 8th January. Please get in touch for more info
www.findaphd.com/phds/project...
Reposted by Theoretical Biophysics
Don't miss out on our free virtual symposium (Dec. 12th) focused on microbial metabolites and their effects on the host.
Sponsors: @amiposts.bsky.social, Pendulum, & Liv (@zymoresearch.bsky.social)
Registrants will receive free memberships to Applied Microbiology International.
Details below 👇
Sponsors: @amiposts.bsky.social, Pendulum, & Liv (@zymoresearch.bsky.social)
Registrants will receive free memberships to Applied Microbiology International.
Details below 👇
Join @isbscience.org on December 12 for a Virtual Microbiome Symposium highlighting new discoveries about how gut-derived metabolites affect neural, immune, and endocrine systems. Open to microbiome-curious researchers and practitioners everywhere. isbscience.org/events/2025-...
2025 ISB Virtual Microbiome Symposium - Institute for Systems Biology (ISB)
The gut’s microbial ecosystem produces diverse metabolites that actively shape neural, immune, and endocrine function. Join leading researchers on December 12 as they share new discoveries into these ...
isbscience.org
November 18, 2025 at 11:25 PM
Don't miss out on our free virtual symposium (Dec. 12th) focused on microbial metabolites and their effects on the host.
Sponsors: @amiposts.bsky.social, Pendulum, & Liv (@zymoresearch.bsky.social)
Registrants will receive free memberships to Applied Microbiology International.
Details below 👇
Sponsors: @amiposts.bsky.social, Pendulum, & Liv (@zymoresearch.bsky.social)
Registrants will receive free memberships to Applied Microbiology International.
Details below 👇
Reposted by Theoretical Biophysics
We are back with new YBM sessions!
Abstract submission is open for our next YBM meeting on January 5th 2026.
Submit your abstracts here : t.co/W1qGraRpAc
Sign up for updates : t.co/O7XhxxSn2u
Speaker list of previous sessions can be found on our website: t.co/XBGYf9X4qQ
Abstract submission is open for our next YBM meeting on January 5th 2026.
Submit your abstracts here : t.co/W1qGraRpAc
Sign up for updates : t.co/O7XhxxSn2u
Speaker list of previous sessions can be found on our website: t.co/XBGYf9X4qQ
https://forms.gle/SBeQeAp9MR2UcV259
t.co
November 16, 2025 at 1:22 PM
We are back with new YBM sessions!
Abstract submission is open for our next YBM meeting on January 5th 2026.
Submit your abstracts here : t.co/W1qGraRpAc
Sign up for updates : t.co/O7XhxxSn2u
Speaker list of previous sessions can be found on our website: t.co/XBGYf9X4qQ
Abstract submission is open for our next YBM meeting on January 5th 2026.
Submit your abstracts here : t.co/W1qGraRpAc
Sign up for updates : t.co/O7XhxxSn2u
Speaker list of previous sessions can be found on our website: t.co/XBGYf9X4qQ
Reposted by Theoretical Biophysics
🚨 Soon at 15:30 EU (in 1h), Guillaume Salbreux (Geneva University) will present the talk
From active surfaces to evo-devo-mechanobiology
at the Population Dynamics Seminars.
sites.google.com/view/popdyn/
From active surfaces to evo-devo-mechanobiology
at the Population Dynamics Seminars.
sites.google.com/view/popdyn/
November 14, 2025 at 1:36 PM
🚨 Soon at 15:30 EU (in 1h), Guillaume Salbreux (Geneva University) will present the talk
From active surfaces to evo-devo-mechanobiology
at the Population Dynamics Seminars.
sites.google.com/view/popdyn/
From active surfaces to evo-devo-mechanobiology
at the Population Dynamics Seminars.
sites.google.com/view/popdyn/
Reposted by Theoretical Biophysics
What is the most profitable industry in the world, this side of the law? Not oil, not IT, not pharma.
It's *scientific publishing*.
We call this the Drain of Scientific Publishing.
Paper: arxiv.org/abs/2511.04820
Background: doi.org/10.1162/qss_...
Thread @markhanson.fediscience.org.ap.brid.gy 👇
It's *scientific publishing*.
We call this the Drain of Scientific Publishing.
Paper: arxiv.org/abs/2511.04820
Background: doi.org/10.1162/qss_...
Thread @markhanson.fediscience.org.ap.brid.gy 👇
November 12, 2025 at 10:31 AM
What is the most profitable industry in the world, this side of the law? Not oil, not IT, not pharma.
It's *scientific publishing*.
We call this the Drain of Scientific Publishing.
Paper: arxiv.org/abs/2511.04820
Background: doi.org/10.1162/qss_...
Thread @markhanson.fediscience.org.ap.brid.gy 👇
It's *scientific publishing*.
We call this the Drain of Scientific Publishing.
Paper: arxiv.org/abs/2511.04820
Background: doi.org/10.1162/qss_...
Thread @markhanson.fediscience.org.ap.brid.gy 👇
Reposted by Theoretical Biophysics
Can we leverage bacterial competition for targeted replacement of harmful strains? Maybe! Our recent piece in @natmicrobiol.nature.com provides a theoretical framework and a set of experiments to show what it might take: www.nature.com/articles/s41...
Strain displacement in microbiomes via ecological competition - Nature Microbiology
Mathematical modelling and experimental tests reveal principles that govern displacement of a resident strain by an invader in microbial communities.
www.nature.com
November 7, 2025 at 10:34 PM
Can we leverage bacterial competition for targeted replacement of harmful strains? Maybe! Our recent piece in @natmicrobiol.nature.com provides a theoretical framework and a set of experiments to show what it might take: www.nature.com/articles/s41...
Reposted by Theoretical Biophysics
🆕 in "Ecological Monographs": Static models miss the mark—adding nonlinear, density-based facilitation helps predict coexistence, persistence, and realistic community dynamics
📄Neighbor density-dependent facilitation promotes coexistence and internal oscillation
doi.org/10.1002/ecm....
📄Neighbor density-dependent facilitation promotes coexistence and internal oscillation
doi.org/10.1002/ecm....
November 10, 2025 at 7:45 PM
🆕 in "Ecological Monographs": Static models miss the mark—adding nonlinear, density-based facilitation helps predict coexistence, persistence, and realistic community dynamics
📄Neighbor density-dependent facilitation promotes coexistence and internal oscillation
doi.org/10.1002/ecm....
📄Neighbor density-dependent facilitation promotes coexistence and internal oscillation
doi.org/10.1002/ecm....
Reposted by Theoretical Biophysics
🚨 Next Friday 24/11 15:30 EU, Guillaume Salbreux (Geneva University) will present the talk
From active surfaces to evo-devo-mechanobiology
at the Population Dynamics Seminars.
Subscription sites.google.com/view/popdyn/
From active surfaces to evo-devo-mechanobiology
at the Population Dynamics Seminars.
Subscription sites.google.com/view/popdyn/
November 10, 2025 at 1:33 PM
🚨 Next Friday 24/11 15:30 EU, Guillaume Salbreux (Geneva University) will present the talk
From active surfaces to evo-devo-mechanobiology
at the Population Dynamics Seminars.
Subscription sites.google.com/view/popdyn/
From active surfaces to evo-devo-mechanobiology
at the Population Dynamics Seminars.
Subscription sites.google.com/view/popdyn/
Reposted by Theoretical Biophysics
How can we organize current theoretical approaches for developmental biology - from information to dynamical systems & GRNs - into a common framework?
We propose to think along Marr's 3 levels: computational problem, algorithm, implementation
Check out our review:
arxiv.org/abs/2510.24536
We propose to think along Marr's 3 levels: computational problem, algorithm, implementation
Check out our review:
arxiv.org/abs/2510.24536
November 10, 2025 at 6:46 AM
How can we organize current theoretical approaches for developmental biology - from information to dynamical systems & GRNs - into a common framework?
We propose to think along Marr's 3 levels: computational problem, algorithm, implementation
Check out our review:
arxiv.org/abs/2510.24536
We propose to think along Marr's 3 levels: computational problem, algorithm, implementation
Check out our review:
arxiv.org/abs/2510.24536
Reposted by Theoretical Biophysics
Brückner, D. B., & Tkačik, G. (2024). Information content and optimization of self-organized developmental systems. Proceedings of the National Academy of Sciences, #EpithelialMechanics www.pnas.org/doi/10.1073/...
November 10, 2025 at 8:00 AM
Brückner, D. B., & Tkačik, G. (2024). Information content and optimization of self-organized developmental systems. Proceedings of the National Academy of Sciences, #EpithelialMechanics www.pnas.org/doi/10.1073/...
Reposted by Theoretical Biophysics
interested in mechanobiology and physics of living systems? this is the conference for you! Join us 9-12 June in Heidelberg! with @nicolettapetridou.bsky.social @xaviertrepat.bsky.social Enrique Rojas & Alba Diz-Munoz
Registration OPEN
www.embl.org/about/info/c...
Registration OPEN
www.embl.org/about/info/c...
November 6, 2025 at 11:50 AM
interested in mechanobiology and physics of living systems? this is the conference for you! Join us 9-12 June in Heidelberg! with @nicolettapetridou.bsky.social @xaviertrepat.bsky.social Enrique Rojas & Alba Diz-Munoz
Registration OPEN
www.embl.org/about/info/c...
Registration OPEN
www.embl.org/about/info/c...
Reposted by Theoretical Biophysics
'Beyond Simplifications: Overlooked Physics of Macromolecular Behaviors in Living Cells' from Macromolecules is currently free to read as an #ACSEditorsChoice.
📖 Read the article: buff.ly/fGxe8gE
📖 Read the article: buff.ly/fGxe8gE
November 3, 2025 at 1:02 PM
'Beyond Simplifications: Overlooked Physics of Macromolecular Behaviors in Living Cells' from Macromolecules is currently free to read as an #ACSEditorsChoice.
📖 Read the article: buff.ly/fGxe8gE
📖 Read the article: buff.ly/fGxe8gE
Reposted by Theoretical Biophysics
Reposted by Theoretical Biophysics
#microsky #mevosky @spp2389.bsky.social
A PhD position is available in my lab to work on:
Emergence and self-organisation of bacterial metabolism in consortia of cross-feeding bacteria.
Please RT
Deadline: 12.11.25
More infos 👇
shorturl.at/rAKAT
A PhD position is available in my lab to work on:
Emergence and self-organisation of bacterial metabolism in consortia of cross-feeding bacteria.
Please RT
Deadline: 12.11.25
More infos 👇
shorturl.at/rAKAT
October 28, 2025 at 8:43 AM
#microsky #mevosky @spp2389.bsky.social
A PhD position is available in my lab to work on:
Emergence and self-organisation of bacterial metabolism in consortia of cross-feeding bacteria.
Please RT
Deadline: 12.11.25
More infos 👇
shorturl.at/rAKAT
A PhD position is available in my lab to work on:
Emergence and self-organisation of bacterial metabolism in consortia of cross-feeding bacteria.
Please RT
Deadline: 12.11.25
More infos 👇
shorturl.at/rAKAT
Reposted by Theoretical Biophysics
🚨 On Friday 24/10 15:30 EU, Dani Rodríguez Amor (École Normale Supérieure - Paris Sciences et Lettres) will present the talk
Cooperation-driven multistability in synthetic microbial communities
at the Population Dynamics Seminars.
Subscription sites.google.com/view/popdyn/
Cooperation-driven multistability in synthetic microbial communities
at the Population Dynamics Seminars.
Subscription sites.google.com/view/popdyn/
October 20, 2025 at 11:27 PM
🚨 On Friday 24/10 15:30 EU, Dani Rodríguez Amor (École Normale Supérieure - Paris Sciences et Lettres) will present the talk
Cooperation-driven multistability in synthetic microbial communities
at the Population Dynamics Seminars.
Subscription sites.google.com/view/popdyn/
Cooperation-driven multistability in synthetic microbial communities
at the Population Dynamics Seminars.
Subscription sites.google.com/view/popdyn/