Xenium makes #spatial omics accessible since unless you are designing your own panel, or doing large number of experiments and generating data at scale, one really doesn't really need to code. The free Xenium Explorer software is enough to analyze data & generate publication quality images. 🧬🖥️

Excited to join the #Nanopore Community on BlueSky.
Follow us for the latest updates and discussions about Oxford Nanopore and Nanopore Community. #WYMM

Are you new to single cell research?

10X Genomics just released a beginners guide to help build your confidence. Check it out!

www.10xgenomics.com/what-is-sing...

Synthelic lethality is the goldmine of anticancer drug targets. The paper has some great datasets. 🖥️🧬 www.nature.com/articles/s41...

Most interesting one here is Curio bioscience where one can do spatial mapping of single cell data without having to design panels. www.genengnews.com/a-lists/top-...

Want to understand how I use the fantastic -resume feature in #Nextflow to develop my pipelines in a modular approach, saving progress and avoiding reruns? Check out my latest blog post.

Hopefully someone finds it useful 👍
#Bioinformatics

lpembleton.rbind.io/posts/build-...

CpGPT: a Foundation Model for DNA Methylation
www.biorxiv.org/content/10.1...

MethylGPT: a foundation model for the DNA methylome
www.biorxiv.org/content/10.1...

Exciting self supervised models trained on massive cross-platform methylation data by @bowang87.bsky.social lab. 1/

Among the #LLM, I use #Llama and Codellama all the time. I am writing APIs to find hosts for all known viruses and it gets more than 95% concordance with what we got by manually scraping through databases. Every single time i am amazed like "how is this thing available for free?" :D

A little birdie told us we should migrate to bluer skies. 😉 Hello Bluesky world. 👋🌎 Please re-share this post so we can follow you and help to grow the genomics community on here! 🧬✨

Along with R, Python, bash and Nextflow, SQL should be an integral part of bioinformatics training. How a simple integration of SQLite in workflows improves speed and efficiency is not appreciated enough. 🖥️🧬

As I've seen some of the newer folks wonder how Bluesky is going to handle verification, let me drop this here: How to use your domain as your Bluesky handle. As you can see, I have done it, and no one else here has access to my domain, so you can tell it's really me.

bsky.social/about/blog/4...

I created a genomics+bioinformatics starter pack. If I left you off, *please* reply and I'll add you! go.bsky.app/B5YYBfq

I am a computational biologist at NYU working in multiomics studies for transplant patients. Actively working on integrating the power of generative AI and cloud computing in bioinformatics. Looking forward to interact and learn more with everyone here.

Hi everyone!!! Feels so fresh here. Can finally breathe.