Ryan Doughty
@ryandoughty.bsky.social
Rice CS PhD Student | Treangen Lab + Tisza Lab (BCM) | Bioinformatics and Viromics | Former CWRU Men's Soccer
Some of my work from the first year of my PhD is out as a preprint, please check it out!
Virus evolution is rapid and prolific both across and within individuals. However, a significant amount of variation remains hidden due to computational bottlenecks in read-alignment and variant calling
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Virus evolution is rapid and prolific both across and within individuals. However, a significant amount of variation remains hidden due to computational bottlenecks in read-alignment and variant calling
1/n
December 8, 2025 at 3:03 PM
Some of my work from the first year of my PhD is out as a preprint, please check it out!
Virus evolution is rapid and prolific both across and within individuals. However, a significant amount of variation remains hidden due to computational bottlenecks in read-alignment and variant calling
1/n
Virus evolution is rapid and prolific both across and within individuals. However, a significant amount of variation remains hidden due to computational bottlenecks in read-alignment and variant calling
1/n
Reposted by Ryan Doughty
A Comparison of Methods for the Optimal Recovery of the Human Fecal Virome https://www.medrxiv.org/content/10.1101/2025.05.12.25327428v1
May 13, 2025 at 8:40 PM
A Comparison of Methods for the Optimal Recovery of the Human Fecal Virome https://www.medrxiv.org/content/10.1101/2025.05.12.25327428v1
Reposted by Ryan Doughty
Upcoming wastewater virome webinar from Dr. Mike Tisza, Feb. 12! Free for everyone.
More: coms.osu.edu/events/early...
#virus #virome #viromics #pathogen #sequencing #microbiome #microbe #bacteria #science #microbiology #webinar
More: coms.osu.edu/events/early...
#virus #virome #viromics #pathogen #sequencing #microbiome #microbe #bacteria #science #microbiology #webinar
February 10, 2025 at 9:34 PM
Upcoming wastewater virome webinar from Dr. Mike Tisza, Feb. 12! Free for everyone.
More: coms.osu.edu/events/early...
#virus #virome #viromics #pathogen #sequencing #microbiome #microbe #bacteria #science #microbiology #webinar
More: coms.osu.edu/events/early...
#virus #virome #viromics #pathogen #sequencing #microbiome #microbe #bacteria #science #microbiology #webinar
Reposted by Ryan Doughty
We interrupt your regularly-scheduled chaos to bring you some cool microbiome science. 🦠 🖥️ 🧬
"Longitudinal phage–bacteria dynamics in the early life gut microbiome" now out in Nature Microbiology.
We wanted a way to measure bacteria and phage in metagenomes 1/
www.nature.com/articles/s41...
"Longitudinal phage–bacteria dynamics in the early life gut microbiome" now out in Nature Microbiology.
We wanted a way to measure bacteria and phage in metagenomes 1/
www.nature.com/articles/s41...
Longitudinal phage–bacteria dynamics in the early life gut microbiome - Nature Microbiology
Reanalysis of 12,262 longitudinal infant gut microbiome samples using the Marker-MAGu pipeline revealed phage–bacteria dynamics over the first year of life.
www.nature.com
February 4, 2025 at 8:52 PM
We interrupt your regularly-scheduled chaos to bring you some cool microbiome science. 🦠 🖥️ 🧬
"Longitudinal phage–bacteria dynamics in the early life gut microbiome" now out in Nature Microbiology.
We wanted a way to measure bacteria and phage in metagenomes 1/
www.nature.com/articles/s41...
"Longitudinal phage–bacteria dynamics in the early life gut microbiome" now out in Nature Microbiology.
We wanted a way to measure bacteria and phage in metagenomes 1/
www.nature.com/articles/s41...
Reposted by Ryan Doughty
Congrats to Bryce Kille on absolutely smashing his PhD defense at Rice today with advisor @treangen.bsky.social ! Collaborating with Bryce over the past few years has been an absolute delight 👏🎉👏🎉
January 27, 2025 at 8:56 PM
Congrats to Bryce Kille on absolutely smashing his PhD defense at Rice today with advisor @treangen.bsky.social ! Collaborating with Bryce over the past few years has been an absolute delight 👏🎉👏🎉