3D'omics
@3domics.bsky.social
@3domics goal is to generate 3D #omics landscapes, reconstructing intestinal #host #microbiota #ecosystems. #EU-funded #H2020 #RIA http://3domics.eu/
Pinned
3D'omics
@3domics.bsky.social
· 17d
3D'omics - Challenges and Solutions
YouTube video by 3D'omics
www.youtube.com
🚨 More news today!
We are excited to share our new video 📽️ presenting the *challenges and solutions* of the last 4 years!
Check it out on youtube!
www.youtube.com/watch?v=RWeq...
We are excited to share our new video 📽️ presenting the *challenges and solutions* of the last 4 years!
Check it out on youtube!
www.youtube.com/watch?v=RWeq...
The 𝟯𝗿𝗱 𝗖𝗼𝗽𝗲𝗻𝗵𝗮𝗴𝗲𝗻 𝗚𝘂𝘁 𝗠𝗶𝗰𝗿𝗼𝗯𝗶𝗼𝗺𝗲 𝗛𝘂𝗯 𝗦𝘆𝗺𝗽𝗼𝘀𝗶𝘂𝗺 was yesterday and 3D’omics was not only there in large numbers, but also received the poster prize! Huge congratulations to Amalia Bogri 🎉🥳 Her fantastic poster impressed the judges and informed the audience about the exciting research we are doing!
November 13, 2025 at 5:53 AM
The 𝟯𝗿𝗱 𝗖𝗼𝗽𝗲𝗻𝗵𝗮𝗴𝗲𝗻 𝗚𝘂𝘁 𝗠𝗶𝗰𝗿𝗼𝗯𝗶𝗼𝗺𝗲 𝗛𝘂𝗯 𝗦𝘆𝗺𝗽𝗼𝘀𝗶𝘂𝗺 was yesterday and 3D’omics was not only there in large numbers, but also received the poster prize! Huge congratulations to Amalia Bogri 🎉🥳 Her fantastic poster impressed the judges and informed the audience about the exciting research we are doing!
🚨 More news today!
We are excited to share our new video 📽️ presenting the *challenges and solutions* of the last 4 years!
Check it out on youtube!
www.youtube.com/watch?v=RWeq...
We are excited to share our new video 📽️ presenting the *challenges and solutions* of the last 4 years!
Check it out on youtube!
www.youtube.com/watch?v=RWeq...
3D'omics - Challenges and Solutions
YouTube video by 3D'omics
www.youtube.com
October 27, 2025 at 8:52 AM
🚨 More news today!
We are excited to share our new video 📽️ presenting the *challenges and solutions* of the last 4 years!
Check it out on youtube!
www.youtube.com/watch?v=RWeq...
We are excited to share our new video 📽️ presenting the *challenges and solutions* of the last 4 years!
Check it out on youtube!
www.youtube.com/watch?v=RWeq...
🚨 New preprint alert! 🚨
3D'omics introduces #Micro-scale #spatial #metagenomics — a method to reveal the high-resolution spatial biogeography of gut microbiomes.
🧵👇
www.biorxiv.org/content/10.1...
3D'omics introduces #Micro-scale #spatial #metagenomics — a method to reveal the high-resolution spatial biogeography of gut microbiomes.
🧵👇
www.biorxiv.org/content/10.1...
www.biorxiv.org
October 27, 2025 at 8:18 AM
🚨 New preprint alert! 🚨
3D'omics introduces #Micro-scale #spatial #metagenomics — a method to reveal the high-resolution spatial biogeography of gut microbiomes.
🧵👇
www.biorxiv.org/content/10.1...
3D'omics introduces #Micro-scale #spatial #metagenomics — a method to reveal the high-resolution spatial biogeography of gut microbiomes.
🧵👇
www.biorxiv.org/content/10.1...
Did you know that #3Domics had their last in-person meeting last week? We were in beautiful Leuven, discussing the final steps of the project. So good to see so many familiar faces! Excited to share more results soon!
September 30, 2025 at 1:03 PM
Did you know that #3Domics had their last in-person meeting last week? We were in beautiful Leuven, discussing the final steps of the project. So good to see so many familiar faces! Excited to share more results soon!
Do you know the EU results packs? They provide excellent summaries of topics, such as "Microbiomes and holobiomes as drivers of a sustainable circular bioeconomy". 🦠
@3domics.bsky.social was featured this month! 🔥 Check it out cordis.europa.eu/article/id/4... (foto credit: Bryan Wang)
@3domics.bsky.social was featured this month! 🔥 Check it out cordis.europa.eu/article/id/4... (foto credit: Bryan Wang)
Zooming in on microbial life
A pioneering technology that identifies where microbes live and what they do inside the body could change how we understand their role in...
cordis.europa.eu
July 30, 2025 at 7:43 AM
Do you know the EU results packs? They provide excellent summaries of topics, such as "Microbiomes and holobiomes as drivers of a sustainable circular bioeconomy". 🦠
@3domics.bsky.social was featured this month! 🔥 Check it out cordis.europa.eu/article/id/4... (foto credit: Bryan Wang)
@3domics.bsky.social was featured this month! 🔥 Check it out cordis.europa.eu/article/id/4... (foto credit: Bryan Wang)
Enjoying your summer break? ☀️
@3domics.bsky.social is working hard 👩💻 to provide you with exciting 🦠🔬 research once you're back 🏝️.
We are now starting into the hot phase of the last 5 months of the project 🔥🔥🔥
www.3domics.eu
@3domics.bsky.social is working hard 👩💻 to provide you with exciting 🦠🔬 research once you're back 🏝️.
We are now starting into the hot phase of the last 5 months of the project 🔥🔥🔥
www.3domics.eu
Home
www.3domics.eu
July 29, 2025 at 9:01 AM
Enjoying your summer break? ☀️
@3domics.bsky.social is working hard 👩💻 to provide you with exciting 🦠🔬 research once you're back 🏝️.
We are now starting into the hot phase of the last 5 months of the project 🔥🔥🔥
www.3domics.eu
@3domics.bsky.social is working hard 👩💻 to provide you with exciting 🦠🔬 research once you're back 🏝️.
We are now starting into the hot phase of the last 5 months of the project 🔥🔥🔥
www.3domics.eu
Are you here for the microbes? Listen to this fun podcast!
Please listen and share it with your network @ucph.bsky.social, @dg.dk, @ehologenome.bsky.social, @3domics.bsky.social, @holobiontbiology.bsky.social, @hologen.bsky.social
microbial-connections.simplecast.com/episodes/how...
microbial-connections.simplecast.com/episodes/how...
What if microbes control your thoughts? Studying evolution and ecology from a holobiont perspective | Microbial Connections
What if microbes control your thoughts? From shrews to newts to humans, microbes have been shaping life for millions of years. But their influence goes beyond digestion—some even impact behaviour, dom...
microbial-connections.simplecast.com
June 3, 2025 at 3:09 PM
Are you here for the microbes? Listen to this fun podcast!
You might already know our amazing explainer video created by the talented team at @madeclear.bsky.social — if not, check it out here: www.youtube.com/watch?v=Lo75...
We are excited to share that our second video is now in production and launching this summer!
We are excited to share that our second video is now in production and launching this summer!
May 26, 2025 at 9:57 AM
You might already know our amazing explainer video created by the talented team at @madeclear.bsky.social — if not, check it out here: www.youtube.com/watch?v=Lo75...
We are excited to share that our second video is now in production and launching this summer!
We are excited to share that our second video is now in production and launching this summer!
And just like that the #MicrobiomeAtlas course is over. Thank you all for an amazing week and 5 excellent presentations today! #SpatialMicrobiology #3Domics
May 16, 2025 at 11:54 AM
And just like that the #MicrobiomeAtlas course is over. Thank you all for an amazing week and 5 excellent presentations today! #SpatialMicrobiology #3Domics
Another productive day at the #MicrobiomeAtlas course—so much learning and discovery! Can’t wait to hear from the participants tomorrow. Time is just flying by! #3Domics
May 15, 2025 at 4:04 PM
Another productive day at the #MicrobiomeAtlas course—so much learning and discovery! Can’t wait to hear from the participants tomorrow. Time is just flying by! #3Domics
Today’s bioinformatics session of the #MicrobiomeAtlas course was held with a beautiful view over #Copenhagen 🤩 #3Domics #ScienceWithAView
May 14, 2025 at 12:38 PM
Today’s bioinformatics session of the #MicrobiomeAtlas course was held with a beautiful view over #Copenhagen 🤩 #3Domics #ScienceWithAView
Day 2 of the #MicrobiomeAtlas course! Yesterday we got to know each other, enjoyed some games and pizza. Today we dove into the labs for hands-on technique learning! Excited for what’s to come! #3Domics #ScienceInAction #LabDay
May 13, 2025 at 10:43 AM
Day 2 of the #MicrobiomeAtlas course! Yesterday we got to know each other, enjoyed some games and pizza. Today we dove into the labs for hands-on technique learning! Excited for what’s to come! #3Domics #ScienceInAction #LabDay
#Spatial #Microbiomics course starting in one week!
We are so excited to show the world what 3D'omics is working with!
If you are interested & in Copenhagen, consider joining. 2 last-minute spots just opened up!
We are so excited to show the world what 3D'omics is working with!
If you are interested & in Copenhagen, consider joining. 2 last-minute spots just opened up!
Only 4 days left! Register now!
Free workshop on #Spatial #Microbiomics – From Sampling to Analysis"
Join us in May in #Copenhagen at the Center for Evolutionary Hologenomics. Ideal for PhDs, postdocs & other microbiome enthusiasts.
www.3domics.eu/TrainingEven...
Please share!
Free workshop on #Spatial #Microbiomics – From Sampling to Analysis"
Join us in May in #Copenhagen at the Center for Evolutionary Hologenomics. Ideal for PhDs, postdocs & other microbiome enthusiasts.
www.3domics.eu/TrainingEven...
Please share!
May 5, 2025 at 11:33 AM
#Spatial #Microbiomics course starting in one week!
We are so excited to show the world what 3D'omics is working with!
If you are interested & in Copenhagen, consider joining. 2 last-minute spots just opened up!
We are so excited to show the world what 3D'omics is working with!
If you are interested & in Copenhagen, consider joining. 2 last-minute spots just opened up!
Reposted by 3D'omics
💡🎧How can a #microbe responsible for #ulcers be either beneficial or harmful? Why are fewer children infected today and what does that mean for our #health? Sandra Breum Andersen gives us the answers in the latest #MicrobialConnections episode👇
microbial-connections.simplecast.com/episodes/how...
microbial-connections.simplecast.com/episodes/how...
How growing miniature stomachs can help uncover our evolutionary history with microbes | Microbial Connections
How can a microbe responsible for ulcers be either beneficial or harmful to you depending on your genetic background and at what time in life you are infected? And why are fewer Danish children today ...
microbial-connections.simplecast.com
April 28, 2025 at 8:31 AM
💡🎧How can a #microbe responsible for #ulcers be either beneficial or harmful? Why are fewer children infected today and what does that mean for our #health? Sandra Breum Andersen gives us the answers in the latest #MicrobialConnections episode👇
microbial-connections.simplecast.com/episodes/how...
microbial-connections.simplecast.com/episodes/how...
📢 Did you see the first OA #publication of 3D'omics yet?!
First author Victoria Drauch & colleagues have published their results on differential effects of synbiotic delivery routes in chicken challenged with Salmonella infections!
Read the full study here!
www.sciencedirect.com/science/arti...
First author Victoria Drauch & colleagues have published their results on differential effects of synbiotic delivery routes in chicken challenged with Salmonella infections!
Read the full study here!
www.sciencedirect.com/science/arti...
Differential effects of synbiotic delivery route (feed, water, combined) in broilers challenged with Salmonella Infantis
Salmonella enterica subsp. enterica serovar Infantis (S. Infantis) presents a persistent and multi-drug-resistant threat to poultry production, highli…
www.sciencedirect.com
April 11, 2025 at 9:26 AM
📢 Did you see the first OA #publication of 3D'omics yet?!
First author Victoria Drauch & colleagues have published their results on differential effects of synbiotic delivery routes in chicken challenged with Salmonella infections!
Read the full study here!
www.sciencedirect.com/science/arti...
First author Victoria Drauch & colleagues have published their results on differential effects of synbiotic delivery routes in chicken challenged with Salmonella infections!
Read the full study here!
www.sciencedirect.com/science/arti...
Reposted by 3D'omics
Hi #microbiome community.
If you are interested in microbial networks, feel free to have a look and register in our summer school!
Two days with talks and hands-on on how to annotate your networks and come up with testable hypotheses.
24 and 25 Sep 2025, Leuven , Belgium
@3domics.bsky.social
If you are interested in microbial networks, feel free to have a look and register in our summer school!
Two days with talks and hands-on on how to annotate your networks and come up with testable hypotheses.
24 and 25 Sep 2025, Leuven , Belgium
@3domics.bsky.social
Summer School on Data integration with Microbial Networks and Community Models
Bootstrap 5 Tech Conference Template
msysbiology.com
April 8, 2025 at 1:41 AM
Hi #microbiome community.
If you are interested in microbial networks, feel free to have a look and register in our summer school!
Two days with talks and hands-on on how to annotate your networks and come up with testable hypotheses.
24 and 25 Sep 2025, Leuven , Belgium
@3domics.bsky.social
If you are interested in microbial networks, feel free to have a look and register in our summer school!
Two days with talks and hands-on on how to annotate your networks and come up with testable hypotheses.
24 and 25 Sep 2025, Leuven , Belgium
@3domics.bsky.social
Reposted by 3D'omics
🧀What do cheese, sourdough, & yogurt have in common? #Microbes!🦠
🎧Listen to postdoc Veronica Sinotte in this episode of our podcast #MicrobialConnections as she explains how #FermentedFood is actually "controlled rot" & how it might have evolved💡
microbial-connections.simplecast.com/episodes/fer...
🎧Listen to postdoc Veronica Sinotte in this episode of our podcast #MicrobialConnections as she explains how #FermentedFood is actually "controlled rot" & how it might have evolved💡
microbial-connections.simplecast.com/episodes/fer...
March 31, 2025 at 11:18 AM
🧀What do cheese, sourdough, & yogurt have in common? #Microbes!🦠
🎧Listen to postdoc Veronica Sinotte in this episode of our podcast #MicrobialConnections as she explains how #FermentedFood is actually "controlled rot" & how it might have evolved💡
microbial-connections.simplecast.com/episodes/fer...
🎧Listen to postdoc Veronica Sinotte in this episode of our podcast #MicrobialConnections as she explains how #FermentedFood is actually "controlled rot" & how it might have evolved💡
microbial-connections.simplecast.com/episodes/fer...
Interested in #Food #system #innovations and #climate #change?
Attend our seminar "#microbial game-changers": we will be exploring how microorganisms are driving innovation in sustainable food production and climate solutions.
7 April - 9am-4pm - Litteraturhuset i Oslo
www.nmbu.no/en/research/...
Attend our seminar "#microbial game-changers": we will be exploring how microorganisms are driving innovation in sustainable food production and climate solutions.
7 April - 9am-4pm - Litteraturhuset i Oslo
www.nmbu.no/en/research/...
March 4, 2025 at 8:35 AM
Interested in #Food #system #innovations and #climate #change?
Attend our seminar "#microbial game-changers": we will be exploring how microorganisms are driving innovation in sustainable food production and climate solutions.
7 April - 9am-4pm - Litteraturhuset i Oslo
www.nmbu.no/en/research/...
Attend our seminar "#microbial game-changers": we will be exploring how microorganisms are driving innovation in sustainable food production and climate solutions.
7 April - 9am-4pm - Litteraturhuset i Oslo
www.nmbu.no/en/research/...
*Deadline extended!*
Last chance to join our free workshop on #Spatial #Microbiomics on 12-16 May in #Copenhagen at the Center for Evolutionary Hologenomics. Ideal for PhDs, postdocs & other microbiome enthusiasts.
www.3domics.eu/TrainingEven...
Please share!
Last chance to join our free workshop on #Spatial #Microbiomics on 12-16 May in #Copenhagen at the Center for Evolutionary Hologenomics. Ideal for PhDs, postdocs & other microbiome enthusiasts.
www.3domics.eu/TrainingEven...
Please share!
Microbiome Atlas
www.3domics.eu
February 17, 2025 at 10:52 AM
*Deadline extended!*
Last chance to join our free workshop on #Spatial #Microbiomics on 12-16 May in #Copenhagen at the Center for Evolutionary Hologenomics. Ideal for PhDs, postdocs & other microbiome enthusiasts.
www.3domics.eu/TrainingEven...
Please share!
Last chance to join our free workshop on #Spatial #Microbiomics on 12-16 May in #Copenhagen at the Center for Evolutionary Hologenomics. Ideal for PhDs, postdocs & other microbiome enthusiasts.
www.3domics.eu/TrainingEven...
Please share!
Only 4 days left! Register now!
Free workshop on #Spatial #Microbiomics – From Sampling to Analysis"
Join us in May in #Copenhagen at the Center for Evolutionary Hologenomics. Ideal for PhDs, postdocs & other microbiome enthusiasts.
www.3domics.eu/TrainingEven...
Please share!
Free workshop on #Spatial #Microbiomics – From Sampling to Analysis"
Join us in May in #Copenhagen at the Center for Evolutionary Hologenomics. Ideal for PhDs, postdocs & other microbiome enthusiasts.
www.3domics.eu/TrainingEven...
Please share!
February 12, 2025 at 9:53 AM
Only 4 days left! Register now!
Free workshop on #Spatial #Microbiomics – From Sampling to Analysis"
Join us in May in #Copenhagen at the Center for Evolutionary Hologenomics. Ideal for PhDs, postdocs & other microbiome enthusiasts.
www.3domics.eu/TrainingEven...
Please share!
Free workshop on #Spatial #Microbiomics – From Sampling to Analysis"
Join us in May in #Copenhagen at the Center for Evolutionary Hologenomics. Ideal for PhDs, postdocs & other microbiome enthusiasts.
www.3domics.eu/TrainingEven...
Please share!
Deadline approaching! Free workshop on #Spatial #Microbiomics – From Sampling to Analysis"
Join us in May in #Copenhagen at
@hologenomics.bsky.social Ideal for PhDs, postdocs & other microbiome enthusiasts. Register until February 16th: www.3domics.eu/TrainingEven...
Please share!
Join us in May in #Copenhagen at
@hologenomics.bsky.social Ideal for PhDs, postdocs & other microbiome enthusiasts. Register until February 16th: www.3domics.eu/TrainingEven...
Please share!
February 3, 2025 at 9:09 AM
Deadline approaching! Free workshop on #Spatial #Microbiomics – From Sampling to Analysis"
Join us in May in #Copenhagen at
@hologenomics.bsky.social Ideal for PhDs, postdocs & other microbiome enthusiasts. Register until February 16th: www.3domics.eu/TrainingEven...
Please share!
Join us in May in #Copenhagen at
@hologenomics.bsky.social Ideal for PhDs, postdocs & other microbiome enthusiasts. Register until February 16th: www.3domics.eu/TrainingEven...
Please share!
Reposted by 3D'omics
📢Don't miss out on a great opportunity to join a #free exciting workshop on #Spatial #Microbiomics - From #Sampling to #Analysis in May 2025 here @hologenomics.bsky.social in Copenhagen!🦠
The workshop is arranged by @3domics.bsky.social!
@dg.dk, @holobiontbiology.bsky.social, @hologen.bsky.social
The workshop is arranged by @3domics.bsky.social!
@dg.dk, @holobiontbiology.bsky.social, @hologen.bsky.social
Join us in May in #Copenhagen at @hologenomics.bsky.social
for an exciting #workshop on #microbiomics! "Spatial #Microbiomics – From Sampling to Analysis" 📷May 2025. Ideal for PhDs, postdocs & other microbiome enthusiasts. Register until February 16th: 3domics.eu/TrainingEven... Please re-post!
for an exciting #workshop on #microbiomics! "Spatial #Microbiomics – From Sampling to Analysis" 📷May 2025. Ideal for PhDs, postdocs & other microbiome enthusiasts. Register until February 16th: 3domics.eu/TrainingEven... Please re-post!
Microbiome Atlas
3domics.eu
January 7, 2025 at 12:03 PM
📢Don't miss out on a great opportunity to join a #free exciting workshop on #Spatial #Microbiomics - From #Sampling to #Analysis in May 2025 here @hologenomics.bsky.social in Copenhagen!🦠
The workshop is arranged by @3domics.bsky.social!
@dg.dk, @holobiontbiology.bsky.social, @hologen.bsky.social
The workshop is arranged by @3domics.bsky.social!
@dg.dk, @holobiontbiology.bsky.social, @hologen.bsky.social
Join us in May in #Copenhagen at @hologenomics.bsky.social
for an exciting #workshop on #microbiomics! "Spatial #Microbiomics – From Sampling to Analysis" 📷May 2025. Ideal for PhDs, postdocs & other microbiome enthusiasts. Register until February 16th: 3domics.eu/TrainingEven... Please re-post!
for an exciting #workshop on #microbiomics! "Spatial #Microbiomics – From Sampling to Analysis" 📷May 2025. Ideal for PhDs, postdocs & other microbiome enthusiasts. Register until February 16th: 3domics.eu/TrainingEven... Please re-post!
Microbiome Atlas
3domics.eu
January 7, 2025 at 11:52 AM
Join us in May in #Copenhagen at @hologenomics.bsky.social
for an exciting #workshop on #microbiomics! "Spatial #Microbiomics – From Sampling to Analysis" 📷May 2025. Ideal for PhDs, postdocs & other microbiome enthusiasts. Register until February 16th: 3domics.eu/TrainingEven... Please re-post!
for an exciting #workshop on #microbiomics! "Spatial #Microbiomics – From Sampling to Analysis" 📷May 2025. Ideal for PhDs, postdocs & other microbiome enthusiasts. Register until February 16th: 3domics.eu/TrainingEven... Please re-post!
Looking for something exciting to learn next year?
📣 Join the 3D'omics Workshop: "Spatial Microbiomics – From Sampling to Analysis" 📅 May 12-16, 2025,📍Copenhagen, DK
Ideal for PhDs, postdocs & other microbiome enthusiasts!
🔗 Register now: www.3domics.eu/TrainingEven...
#Microbiome #Workshop
📣 Join the 3D'omics Workshop: "Spatial Microbiomics – From Sampling to Analysis" 📅 May 12-16, 2025,📍Copenhagen, DK
Ideal for PhDs, postdocs & other microbiome enthusiasts!
🔗 Register now: www.3domics.eu/TrainingEven...
#Microbiome #Workshop
Microbiome Atlas
www.3domics.eu
December 17, 2024 at 12:55 PM
Looking for something exciting to learn next year?
📣 Join the 3D'omics Workshop: "Spatial Microbiomics – From Sampling to Analysis" 📅 May 12-16, 2025,📍Copenhagen, DK
Ideal for PhDs, postdocs & other microbiome enthusiasts!
🔗 Register now: www.3domics.eu/TrainingEven...
#Microbiome #Workshop
📣 Join the 3D'omics Workshop: "Spatial Microbiomics – From Sampling to Analysis" 📅 May 12-16, 2025,📍Copenhagen, DK
Ideal for PhDs, postdocs & other microbiome enthusiasts!
🔗 Register now: www.3domics.eu/TrainingEven...
#Microbiome #Workshop
🐾New insights into #hologenomics! Raphael Eisenhofer
et al. explore the complex relationship between #wild #vertebrates and their #microbiomes🦠
The study suggests how to generate robust and efficient hologenomic data from wild vertebrates 👇
ceh.ku.dk/news/2024/ne...
et al. explore the complex relationship between #wild #vertebrates and their #microbiomes🦠
The study suggests how to generate robust and efficient hologenomic data from wild vertebrates 👇
ceh.ku.dk/news/2024/ne...
New insights into hologenomics research in wild vertebrates
In a new technical paper just published in Methods in Ecology and Evolution, researchers highlight the potential of hologenomics to deepen our understanding of biological systems from a host-microbiot...
ceh.ku.dk
November 26, 2024 at 11:08 AM
🐾New insights into #hologenomics! Raphael Eisenhofer
et al. explore the complex relationship between #wild #vertebrates and their #microbiomes🦠
The study suggests how to generate robust and efficient hologenomic data from wild vertebrates 👇
ceh.ku.dk/news/2024/ne...
et al. explore the complex relationship between #wild #vertebrates and their #microbiomes🦠
The study suggests how to generate robust and efficient hologenomic data from wild vertebrates 👇
ceh.ku.dk/news/2024/ne...