Takashi Nakamura
tnakamura2021.bsky.social
Takashi Nakamura
@tnakamura2021.bsky.social

Supramolecular Chemistry, Univ. of Tsukuba

https://www.chem.tsukuba.ac.jp/nakamura/en/index.html

Engineering 42%
Chemistry 18%

I am honored to become professor as of January 1,
following my time as a Tsukuba Top Runner assistant professor.
I would like to express my sincere gratitude to the faculty members,
collaborators, and all students of the lab.
We will continue to take on new challenges!

Tomorrow!!
Thursday, Dec 18, 8:00 - 16:55
MAC016 Frontier Of Discrete Oligomers, Polymers, And Assemblies
326B (Balcony), Hawaii Convention Center
#Pacifichem2025
URL: sites.google.com/view/discret...

This week's journal club
doi.org/10.1021/jacs...
Acceleration and Selectivity of 1,3-Dipolar Cycloaddition Reactions Included in a Polar [4 + 2] Octa-imine Bis-calix[4]pyrrole Cage
We describe the quantitative self-assembly (>90%) of a [4 + 2] octa-imine cage (1) in a CDCl3:CD3CN 9:1 solvent mixture containing 0.5% of acetic acid. Cage 1 is based on two identical aryl-extended calix[4]pyrrole units linked through eight dynamically reversible imine bonds. Cage 1 forms thermodynamically and kinetically highly stable inclusion complexes featuring 1:1 and 2:1 stoichiometry with suitable para-substituted pyridine-N-oxides. The ability of 1 for the pairwise inclusion of two different pyridine-N-oxides led us to investigate its properties as a reactor vessel. The coinclusion of 4-azido pyridine-N-oxide and 4-ethynyl pyridine-N-oxide did not produce a detectable acceleration of their 1,3-dipolar cycloaddition reaction. Conversely, the coinclusion in cage 1 of the same alkyne dipolarophile with 4-azido(alkyl) pyridine-N-oxides (alkyl= methyl, ethyl) produced significant reaction acceleration. We quantified the reactions’ acceleration with an effective molarity (EM) of ∼103 M, corresponding to the more prominent reported value of a bimolecular 1,3-dipolar cycloaddition reaction in a molecular vessel by directly detecting the ternary Michaelis complex. The included reactions are quantitative and regioselective, yielding exclusively the 1,4-disubstituted triazole isomers. We propose that the selectivity of 1 in accelerating the included 1,3-dipolar cycloadditions is related to (a) the entropy gain provoked by the reaction’s inclusion, (b) the rigidity of the container, and (c) the spatial fixation of the polar knobs (pyridine-N-oxide) carrying the reacting groups in its two functionalized hemispheres. The two latter characteristics render the distance between the reacting groups (azido and ethynyl) almost fixed by design, thus allowing or not achieving the transition state’s geometry. We support our hypothesis with the help of DFT calculations of the inclusion complexes’ structures.
doi.org

This week's journal club
doi.org/10.1021/jacs...
Tuning Bro̷nsted Acidity by up to 12 pKa Units in a Redox-Active Nanopore Lined with Multifunctional Metal Sites
Electrostatic interactions, hydrogen bonding, and solvation effects can alter the free energies of ionizable functional groups in proteins and other nanoporous architectures, allowing such structures to tune acid–base chemistry to support specific functions. Herein, we expand on this theme to examine how metal sites (M = H2, ZnII, CoII, CoI) affect the pKa of benzoic acid guests bound in discrete porphyrin nanoprisms (M3TriCage) in CD3CN. These host–guest systems were chosen to model how porous metalloporphyrin electrocatalysts might influence H+ transfer processes that are needed to support important electrochemical reactions (e.g., reductions of H+, O2, or CO2). Usefully, the cavities of the host–guest complexes become hydrated at low water concentrations (10–40 mM), providing a good representation of the active sites of porous electrocatalysts in water. Under these conditions, Lewis acidic CoII and ZnII ions increase the Bro̷nsted acidities of the guests by 4 and 8 pKa units, respectively, while reduction of the CoII sites to anionic CoI sites produces an electrostatic potential that lowers acidity by ca. 4 units (8 units relative to the CoII state). Lacking functional metal sites, H6TriCage increases the acidity of the guests by just 2.5 pKa units despite the 12+ charge of this host and contributions from other factors (hydrogen bonding, hydration) that might stabilize the deprotonated guests. Thus, the metal sites have dominant effects on acid–base chemistry in the M3TriCages, providing a larger pKa range (12.75 to ≥24.5) for an encapsulated acid than attained via other confinement effects in proteins and artificial porous materials.
doi.org

This week's journal club
doi.org/10.1016/j.ch...
Redirecting
doi.org

The 12th Asian Cyclodextrin Conference, Doshisha University, Kyoto, Japan